Thanks for the response.
I am already successfully sending commands to Batch Tools via Python, but the run command is new in the 2017 version they just released. I believe it allows the highpoly to be cached in ram so it does not need to be reloaded for every command that you send to Batch Tools. You build the json file, and then send that to the new run command.
I just have no clue how to format the Json file, a few attempts proved incorrect.